Bioinformatics platform (BIM) is divided into  two specific services.

The first one is concerning the image processing:

The second one is concerning data analysis from high-throughput sequencing :

Here are the main proposed services:

• Data Analysis from high-throughput sequencing  from different origins:
  • Trnascriptomics data ( RNA-Seq, single cell RNA-Seq, …)
  • Genomique data (Chip-Seq, HiC-seq, 4C-seq, ATAC-seq …)
  • Epigenetics data (Smrt-seq, RRBS-seq, RREM-seq, …)

• Implementation of new solutions and tools for data processing and analysis:
  • Developing specific tools for data analysis (Python, Java, C++ languages)
  • Writing generic R scripts for statistics computation and automatic figures génération
  • Source code deposit on IGReD GitHub.

• Interaction with research teams 
  • Models diversity in the laboratory ( Human, Mouse, Drosophila, Arabidopsis, Chicken, C-elegans)
  • Project Progress meetings ( definition of goals  , work follow up, discussions on results)
  • Results valorization for publication and “Material and Methods” writing
  • Advice on technological choice for high-throughput sequencing

• Training session on informatics and bioinformatics tools
  • Bash commands introduction
  • Individual training on using specific tools  for project achievement
  • Writing documentation to help users using bioinformatics tools

• Construct and update bioinformatics platform inside the laboratory
  • Platform development  with implementation of ressources and documentation

For IGReD members you can find a service form here