Bioinformatics platform (BIM) aims to help researchers of the iGReD laboratory with all tasks concerning image processing and data analysis from high-throughput sequencing.
This platform is only opened to members of the laboratory and doesn't provide external services.
This platform is only opened to members of the laboratory and doesn't provide external services.
Missions
Bioinformatics platform (BIM) is divided into two specific services.
The first one is concerning the image processing:
The second one is concerning data analysis from high-throughput sequencing :
Here are the main proposed services:
- Data Analysis from high-throughput sequencing from different origins:
- Trnascriptomics data ( RNA-Seq, single cell RNA-Seq, …)
- Genomique data (Chip-Seq, HiC-seq, 4C-seq, ATAC-seq …)
- Epigenetics data (Smrt-seq, RRBS-seq, RREM-seq, …)
- Phylogenetics analysis (Study of gene evolutionary history)
- Proteomics (3D structure protein prediction)
- Implementation of new solutions and tools for data processing and analysis:
- Developing specific tools for data analysis (Python, Java, C++ languages)
- Writing generic R scripts for statistics computation and automatic figures génération
- Source code deposit on IGReD GitHub.
- Interaction with research teams
- Models diversity in the laboratory ( Human, Mouse, Drosophila, Arabidopsis, Chicken, C-elegans)
- Project Progress meetings ( definition of goals , work follow up, discussions on results)
- Results valorization for publication and “Material and Methods” writing
- Advice on technological choice for high-throughput sequencing
- Training session on informatics and bioinformatics tools
- Bash commands introduction
- Individual training on using specific tools for project achievement
- Writing documentation to help users using bioinformatics tools
- Construct and update bioinformatics platform inside the laboratory
- Platform development with implementation of ressources and documentation
For IGReD members you can find a service form here